Tier 0 · open
CO2 capture -> biomass/product
CONSORTIUM (additive)
corpus v0.3.0 · hash 3574ed92836e…
Model licensing
Every model in this run is openly redistributable (CC-BY + CC0). You may reuse them, including commercially, with attribution to each source. Nothing here needs to be obtained elsewhere.
Provenanced sample report (Syntropa discovery, role-aware Stage-1). Corpus v0.3.0 (15717 models, fingerprint 3574ed92836e) · tools v0.1.0 (git 38fbc04, code 7965284a0cdb) · env py3.13.13 win32 swiglpk5.0.13+osqp1.1.3+highspy1.15.1+pyscipopt6.2.1+optlang1.9.1 (deps fec80ac6eed5). Feed={'CO2': 20, 'hydrogen': 20} target=acetate mode=produce. Report id 75ca114d4b6d (content-addressed to config + EXACT corpus + EXACT tools -> reproducible/auditable). Honest-by-construction: read the caveats.
Verdict: CONSORTIUM (additive)
a multi-member consortium achieves the target; emergence not established.
Super-additivity + honest scope
- Best SINGLE organism reaches 51.935; best CONSORTIUM reaches 32.156 (~0.6x) -- a real multi-member effect.
- The 4088 feedstock-dependent candidates are COMBINATIONS over a diverse front-end core and largely SHARE the finisher(s) ['apollo595_panblautia_hansenii'] -- they are variations on a small number of core relays, NOT 4088 independent discoveries. The biological finding is the finisher + its best partners, not the raw count.
Ranked feedstock-dependent candidates (top 10 of 4088)
| rank | n | production | emergence | members |
|---|---|---|---|---|
| 1 | 2 | 32.156 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + embl_alkaliphilus_metalliredigens_qymf (embl_gems (CarveMe RefSeq, Machado 2018)/draft) |
| 2 | 2 | 32.122 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + embl_sporomusa_ovata_dsm_2662 (embl_gems (CarveMe RefSeq, Machado 2018)/draft) |
| 3 | 2 | 31.943 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + embl_acetobacterium_wieringae_dsm_1911 (embl_gems (CarveMe RefSeq, Machado 2018)/draft) |
| 4 | 2 | 31.535 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf014844295 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
| 5 | 2 | 31.514 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + embl_paeniclostridium_sordellii_cba7122 (embl_gems (CarveMe RefSeq, Machado 2018)/draft) |
| 6 | 2 | 31.489 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf019916025 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
| 7 | 2 | 31.424 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf900168155 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
| 8 | 2 | 31.407 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf001282725 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
| 9 | 2 | 31.402 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf001721685 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
| 10 | 2 | 31.386 | additive | apollo595_panblautia_hansenii (APOLLO-595/draft) + cme_gcf902386925 (CarveMe 1.6.6 reconstruction from NCBI RefSeq proteome/draft) |
Attribution
Every model above is credited by id + source. Model authors: your reconstruction appears in this result. (Impact-ledger stamping = flywheel, pending.)
Caveats (disclosed up front)
- FBA proves a route is stoichiometrically POSSIBLE, not that a living cell will do it.
- Every consortium here is a HYPOTHESIS until cultured; nothing is wet-lab validated.
- Feedstock-dependence is the anti-medium-artifact control: withdraw the feed and the product must collapse (a NOT-feedstock-dependent result is flagged SUSPECT, not a discovery).
- The ranking score is a documented heuristic for human review, not a truth or biology claim.
- Stage-1 selects finisher x diverse front-ends; multi-finisher relays are out of scope. Stage-2 expansion of winners is pending -- these are PRELIMINARY until it runs.